Class Specialization
Scored SeedSet
SeedSet that uses scored Seeds.
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Scored SeedSet | |||||||
Include Headers
seqan/seeds.h
Parameters
Type that saves the positions and upper/lower bounds. Remarks: Positive and negative values are needed. | |
The Seed specialization. | |
The scoring sheme to use. |
Specialization of
Metafunctions
| Type of iterator objects that are used to traverse the container. (SeedSet) | |
| The spec of a class. (SeedSet) | |
| Type of the items in the container. (SeedSet) | |
| Type of the items in the container. (SeedSet) |
Functions
| Adds a seed to an existing set. (SeedSet) | |
| Adds several seeds to an existing set. If a merging or chaining algorithm is used seeds are added if the merging or chaining fails. (SeedSet) | |
| The begin of a container. (SeedSet) | |
| The begin of a container. (SeedSet) | |
| The end of a container. (SeedSet) | |
| The end of a container. (SeedSet) | |
| Sets the maximal distance between two seed during a chaining process. (SeedSet) | |
| Sets the minimum length for a seed to be saved permanently. (SeedSet) | |
| Sets the maximal distance between two seed during a chaining process. (SeedSet) | |
| Sets the minimum length for a seed to be saved permanently. (SeedSet) |
SeqAn - Sequence Analysis Library - www.seqan.de
